Journal of Shandong University (Health Sciences) ›› 2021, Vol. 59 ›› Issue (9): 43-50.doi: 10.6040/j.issn.1671-7554.0.2021.0963

Previous Articles     Next Articles

Advances on drugs derived from microbial sources and future perspectives

JU Jianhua1, YANG Zhenye2,3, LI Qinglian2, HAN Yanan2,3, LI Yanqing2,3, QIAO Yijun2, YANG Hu1, ZHANG Huaran2,3   

  1. 1. School of Pharmaceutical Sciences, Shandong University, Jinan 2500012, Shandong, China;
    2. CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Key Laboratory of Marine Materia Medica, RNAM Center for Marine Microbiology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, Guangdong, China;
    3. College of Marine Science, University of Chinese Academy of Sciences, Beijing 100049, China
  • Published:2021-10-15

Abstract: Microbial drugs play important roles in a panel of therapeutic areas, such as anti-infection, anti-cancer, immunosuppression and metabolic disorder. The long-term abuse of antibiotics has led to the emergence and widespread of drug-resistant bacteria, bringing unprecedented challenges worldwide to the safe and healthy development of public health. Therefore, there is an urgent need for research and development of novel antibiotics. How to discover new drugs with novel chemical structure and mechanism of action from microorganisms to combat the increasingly severe bacterial resistance has become a new challenge for the research and development of microbial drugs. In this review, we gave an overview of the history of microbial drug discovery. The number, producer and indication of the microorganism-derived clinic drugs approved by developed countries, between 1940 and 2019 were also summarized. In addition, due to the urgent need for novel microbial drugs, new strategies for microbiological drug research and development were summarized.

Key words: Microbial drugs, Antibiotics, Drug resistance, Strategies for drug research and development

CLC Number: 

  • R574
[1] Sinh BK, Macdonald CA. Drug discovery from uncultivable microorganisms [J]. Drug Discov Today, 2010, 15(17-18): 792-799.
[2] Seipke RF, Martin K, Hutchings MI. Streptomyces as symbionts: an emerging and widespread theme? [J]. Fems Microbiol Rev, 2012, 36(4): 862-876.
[3] Klassen JL. Microbial secondary metabolites and their impacts on insect symbioses [J]. Curr Opin Insect Sci, 2014, 4: 15-22. doi: 10.1016/j.cois.2014.08.004.
[4] Traxler MF, Kolter R. Natural products in soil microbe interactions and evolution [J]. Nat Prod Rep, 2015, 32(7): 956-970.
[5] Oneill J. Tackling drug-resistant infections globally: final report and recommendations: the review on tntimicrobial tesistance [EB/OL].(2016-05-18)[2021-08-13]. https://wellcomecollection.org/works/thvwsuba.
[6] Shu YZ. Recent natural products based drug development: a pharmaceutical industry perspective [J]. J Nat Prod, 1998, 61(8): 1053-1071.
[7] Hutchings MI, Truman AW, Wilkinson B. Antibiotics: past, present and future [J]. Curr Opin Microbiol, 2019, 51: 72-80. doi: 10.1016/j.mib.2019.10.008.
[8] 张帆. 青霉素的发现简史[J].生物学教学, 2008, 33(7): 70-71.
[9] 王磊, 任东明. 青霉素——从发现到应用[J].生物学通报, 2006, 41(12): 61-62.
[10] Julius H, 刘琼华, 黄世义. 有益的发现——链霉素的故事[J].国外医学(微生物学分册), 1980(1): 47-48.
[11] Bérdy J. Bioactive microbial metabolites [J]. J Antibiot(Tokyo), 2005, 58(1): 1-26.
[12] 寇宏. 细菌耐药性研究进展[J].畜禽业, 2020, 31(3): 37.
[13] Bérdy J. Recent developments of antibiotic research and classification of antibiotics according to chemical structure [J]. Adv Appl Microbiol, 1974, 18(0): 309-406.
[14] Newman DJ, Cragg GM. Natural products as sources of new drugs over the nearly four decades from 01/1981 to 09/2019 [J]. J Nat Prod, 2020, 83(3): 770-803.
[15] Zan J, LI Z, Tianero MD, et al. A microbial factory for defensive kahalalides in a tripartite marine symbiosis [J]. Science, 2019, 364(6445): eaaw6732. doi: 10.1126/science.aaw6732.
[16] Zhang F, Zhao M, Braun DR, et al. A marine microbiome antifungal targets urgent-threat drug-resistant fungi [J]. Science, 2020, 370(6519): 974-978.
[17] Donia MS, Cimermancic P, Schulze CJ, et al. A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics [J]. Cell, 2014, 158(6): 1402-1414.
[18] Zipperer A, Konnerth MC, Laux C, et al. Human commensals producing a novel antibiotic impair pathogen colonization [J]. Nature, 2016, 535(7613): 511-516.
[19] Lincke T, Behnken S, Ishida K, et al. Closthioamide: an unprecedented polythioamide antibiotic from the strictly anaerobic bacterium Clostridium cellulolyticum [J]. Angew Chem Int Ed Engl, 2010, 49(11): 2011-2013.
[20] Ling LL, Schneider T, Peoples AJ, et al. A new antibiotic kills pathogens without detectable resistance [J]. Nature, 2015, 517(7535): 455-459.
[21] Nichols D, Cahoon N, Trakhtenberg EM, et al. Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species [J]. Appl Environ Microbiol, 2010, 76(8): 2445-2450.
[22] Medema MH, de Rond T, Moore BS. Mining genomes to illuminate the specialized chemistry of life [J]. Nat Rev Genet, 2021, 22(9): 553-571.
[23] Liu N, Abramyan ED, Cheng W, et al. Targeted genome mining reveals the biosynthetic gene clusters of natural product cyp51 inhibitors [J]. J Am Chem Soc, 2021, 143(16): 6043-6047.
[24] Yan Y, Liu QK, Zang X, et al. Resistance-gene directed discovery of a natural-product herbicide with a new mode of action [J]. Nature, 2018, 559(7714): 415-418.
[25] Rutledge PJ, Challis GL. Discovery of microbial natural products by activation of silent biosynthetic gene clusters [J]. Nat Rev Microbiol, 2015, 13(8): 509-523.
[26] Yamanaka K, Reynolds KA, Kersten RD, et al. Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A [J]. Proc Natl Acad Sci U S A, 2014, 111(5): 1957-1962.
[27] Wright GD. Opportunities for natural products in 21st century antibiotic discovery [J]. Nat Prod Rep, 2017, 34(7): 694-701.
[28] Wright GD. Antibiotic adjuvants: rescuing antibiotics from resistance [J]. Trends Microbiol, 2016, 24(11): 862-871.
[29] Perry JA, Koteva K, Verschoor CP, et al. A macrophage-stimulating compound from a screen of microbial natural products [J]. J Antibiot(Tokyo), 2015, 68(1): 40-46.
[30] Garland M, Loscher S, Bogyo M. Chemical strategies to target bacterial virulence [J]. Chem Rev, 2017, 117(5): 4422-4461.
[31] PEW Trust. Antibiotics currently in global clinical development [EB/OL].(2021-03-09)[2021-08-13]. https://www.pewtrusts.org/en/research-and-analysis/data-visualizations/2014/antibiotics-currently-in-clinical-development.
[1] GE Li-Juan, JIN Rui-Feng, WANG Ji-Wen, HU Xin-Sheng, LIKun. Association between the C1236T polymorphism in multi-drug resistance gene 1 and response to antiepileptic drug treatment in epileptic patients [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2209, 47(6): 99-102.
[2] AN Yuanxiaoxue, DU Yiming, TIAN Tian, ZHANG Yi, XUE Yuwen. Pulmonary infection caused by Nocardia pneumoniae and Nocardia amamiensis: a case report and literature review [J]. Journal of Shandong University (Health Sciences), 2022, 60(3): 59-63.
[3] WANG Zhouyang, JIANG Bei, LI Xianhua, ZHEN Junhui, YANG Xiangdong, HU Zhao, LIU Guangyi, PEI Fei. A case of infective endocarditis and acute kidney injury with positive PR3-ANCA [J]. Journal of Shandong University (Health Sciences), 2022, 60(2): 60-64.
[4] LI Yan, LIU Jing, LI Juan, YANG Qiuhong. Clinical characteristics and placental pathology of bloodstream infection in 50 pregnant women [J]. Journal of Shandong University (Health Sciences), 2022, 60(1): 48-54.
[5] Chunfang HA,Ruyue LI. Research progress of drug resistance in ovarian cancer and targeted therapy strategy [J]. Journal of Shandong University (Health Sciences), 2021, 59(9): 117-123.
[6] XU Bing, LI Yong, LIU Ming, LIU Yonghui. Silencing PRRX1 gene expression enhances the sensitivity of prostate cancer resistant cell line PC-3/DTX to docetaxel [J]. Journal of Shandong University (Health Sciences), 2021, 59(6): 103-110.
[7] FU Zhenmei, MA Mingze. Expression of P-glycoprotein in the colonic mucosa of ulcerative colitis patients and its clinical significance [J]. Journal of Shandong University (Health Sciences), 2020, 58(12): 54-59.
[8] ZHANG Ning, YANG Yan, LI Rui, YIN Yunhong, LI Hao, QU Yiqing. Analysis of risk factors and drug resistance of Acinetobacter baumannii in patients with chronic obstructive pulmonary disease [J]. Journal of Shandong University (Health Sciences), 2019, 57(9): 88-96.
[9] CUI Yi, YIN Mei, LI Wei, LI Yuan, HAN Hui, SHAN Tichao, YUE Jinfeng, DING Shifang, LI Chen, CHEN Xiaomei, WU Dawei, WANG Hao. Changes of the incidence, antibiotic resistance, antibiotic therapy and prognosis in patients with Staphylococcus aureus bloodstream infection in Qilu Hospital of Shandong University [J]. Journal of Shandong University (Health Sciences), 2018, 56(12): 33-38.
[10] WANG Chuanxin. Research progress of exosomes biomarkers in tumor development [J]. Journal of Shandong University (Health Sciences), 2018, 56(10): 18-23.
[11] MENG Wei, WU Dawei, SHAN Tichao, ZHANG Fan, GUO Haipeng, LIU Yu, DING Shifang, ZHAI Qian. Tigecycline in treating ventilator-associated pneumonia in critically ill patients [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2017, 55(4): 71-75.
[12] YANG Ding,YANG Peng, LI Yubo, SUN Qiang. Changes in prescriptions for upper respiratory tract infections in Z county of Shandong Province:a panel data analysis of 8 village clinics [J]. Journal of Shandong University (Health Sciences), 2017, 55(12): 88-94.
[13] YUAN Yuan, SI Heng, LIU Hongwei, LIU Chunhua, WANG Zhe, RUAN Yuhua, XING Hui. HIV drug resistance and the impact of antiretroviral therapy initiated at different stages among AIDS patiens [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2016, 54(9): 77-81.
[14] LIU Qiong, PU Yedi, DAI Guangxia, MA Jiale, YANG Jianxia, LI Lizhen, LI Hao, WANG Luqun. A microarray analysis of bortezomib-resistant gene expression in multiple myeloma [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2015, 53(6): 33-38.
[15] LIU Zhenyan, HU Bin, BI Zhenwang, KOU Zengqiang, FANG Ming, CHEN Baoli, REN Yanyan, BI Zhenqiang. Antibiotic resistance on group A streptococcus among children in 4 cities of Shandong Province in 2013 [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2015, 53(1): 77-80.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
[1] SUN Wei-peng,ZOU Wei-wei,XI Yan-wei,ZHANG Na. Oral absorption effect of liposomes with different sizes on TFu[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, 45(6): 639 -642 .
[2] YU Qing-mei,WU Yu-ling,SONG Hai-yan,YIN Hua-wei,ZHUANG Yuan. Expression of p38 mitogen-activated protein kinase in early embryos and the peri-implantation endometrium in mice[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2008, 46(2): 123 -127 .
[3] XIAO Wei-ling,LIN Ya-jie,MU Dong-zhen,SUN Ping,LIANG Shu-juan. Recombinational expression of classical pathway secreted human IL-1β in hepatoma H7402 cells[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2008, 46(2): 119 -122 .
[4] ZHANG Yong,YE Jing,GUO Xin-xing,XIAO Shui-qing. Immunohistochemical expression of IL-8 in pulpal tissues on orthodontic rapid tooth movement through distraction osteogenesis of the periodontal ligament[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2008, 46(4): 379 -381 .
[5] . [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, 45(7): 751 -752 .
[6] ZHANG Yuan-kai, LIU Pei-lai, LI De-qiang, LI Ming. Application of axial laminar screws combined with atlantal lateralmass screws fixing   method in the surgery of complicated atlantoaxial dislocation[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2010, 48(11): 98 .
[7] HAN Lu1, WANG Bin2, MU Xiao-mei2, GONG Hui-ping3, YAN Hui-min1,WANG Zhi-hao1, ZHANG Yun1, ZHANG Wei1, ZHONG Ming1. Association of adipokines with cardiac abnormalities in patients with metabolic syndrome[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2011, 49(9): 63 .
[8] LI Bo1, LIU Yan-li1,2, WEI Lu-wan1, WANG Jing3, LIU Zhi-yu1, DING Zhao-xi1. Vascular endothelial growth factor C induces differentiation of  bone marrow mesenchymal stem cells into lymphatic endothelial cells[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2011, 49(11): 8 .
[9] LIU Yimin, DU Lutao, WANG Lili, JIANG Xiumei, LI Juan, QU Ailin, WANG Haiyan, ZHENG Guixi, ZHANG Xin,YANG Yongmei, WANG Chuanxin. Identification and validation of suitable reference genes for the investigation of serum microRNA in bladder cancer patients[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2014, 52(5): 86 -91 .
[10] GAO Jing,CHEN Wen,ZHANG Tong-xia,WANG Xiao-hua,DAI Ting-jun,YAO Hong,ZHAO Xiu-he,CHI Zhao-fu,SHAN Pei-yan. Changes of expression of mitochondrial cytochrome oxidase subunits Ⅲ and Ⅳ in the rat hippocampus of temporal lobe epilepsy[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, 45(8): 817 -820 .