Journal of Shandong University (Health Sciences) ›› 2021, Vol. 59 ›› Issue (4): 1-5.doi: 10.6040/j.issn.1671-7554.0.2021.0126

    Next Articles

Research on mixed sample test for SARS-CoV-2

DONG Hongjie1, ZHANG Junmei1,2, WANG Shuai1, WANG Hongwei1, ZHANG Kundi1HU Wei1, XIE Xiaohong2, XIE Shiling2,3, GU Lichuan1   

  1. 1. State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266000, Shandong, China;
    2. Shandong Shtars Medical Technology Co., Ltd., Jinan 250000, Shandong, China;
    3. Shandong Shtars Biological Industry Co., Ltd., Jinan 250000, Shandong, China
  • Published:2021-04-30

Abstract: Objective To determine the reasonable sample sizes of diluted mixed sample test and n-in-1 test in the detection of SARS-CoV-2, so as to provide a more efficient scheme for nucleic acid screening of large samples. Methods A method was designed to extract nucleic acid from the preservation solution of large volume samples using a syringe purification column. In both diluted mixed sample test and n-in-1 test, this method was used in the extraction of nucleic acid from the total preservation solution and from 200 μL solution. The test results were compared. Results In diluted mixed sample test, for a single positive sample, the Ct values of ORF1ab gene and N gene were 3.583 and 2.904 lower from the total preservation solution than from the 200 μL solution; when one positive sample was mixed with 9 negative samples and 19 negative samples, there was no statistical difference in Ct values between the two sample sizes(P>0.05); when the number of mixed samples was more than 20, the Ct values increased significantly. In the n-in-1 test, the Ct values of nucleic acid extracted from total preservation solution was significantly lower than that from 200 μL solution(the current scheme). Conclusion In mixed sample detection, using a syringe purification column to extract nucleic acid from the total preservation solution can increase the maximum number of sample size from 20 to 50. With this strategy, the Ct values of nucleic acid test can be significantly reduced, so as to improve the detection rate and reduce the number of false-negative cases in n-in-1 test.

Key words: Severe Acute Respiratory Syndrome Coronavirus 2, Diluted mixed sample test, n-in-1 test, Syringe purification column, RT-PCR

CLC Number: 

  • R574
[1] Wang C, Horby PW, Hayden FG, et al. A novel coronavirus outbreak of global health concern [J]. Lancet, 2020, 395(10223): 470-473.
[2] Chan JF,Yuan SF, Kok KH, et al. A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission:a study of a family cluster [J]. Lancet, 2020, 395(10223): 514-523.
[3] 新型冠状病毒肺炎诊疗方案(试行 8 版)[EB/OL].(2020-08-18)[2021-03-26]. http://www.gov.cn/zhengce/zhengceku/2020-08/19/5535757/files/da89edf7cc9244fbb34ecf6c61df40bf.
[4] 李太生, 曹玮, 翁利, 等. 北京协和医院关于“新型冠状病毒感染的肺炎”诊疗建议方案(V2.0)[J]. 协和医学杂志, 2020, 11(6): 672-675. LI Taisheng, CAO Wei, WENG Li, et al. Diagnosis and Clinical Management of 2019 Novel Coronavirus(2019-nCoV)Infection: An Operational Recommendation of Peking Union Medical College Hospital(V2.0)[J]. Medical Journal of Peking Union Medical College Hospital, 2020, 11(6): 672-675.
[5] 董宏杰, 张俊梅, 王宏伟, 等. 新型冠状病毒核酸检测过程中灵敏度损失的定量分析[J] 山东大学学报(医学版), 2021, 59(1): 1-7. DONG Hongjie, ZHANG Junmei, WANG Hongwei, et al. Quantitative analysis of the loss of sensitivity in the nucleic acid detection of SARS-CoV-2 [J]. Journal of Shandong University(Health Sciences), 2021, 59(1): 1-7.
[6] Cruz MP, Santos E, Cervantes MAV, et al. COVID-19, a worldwide public health emergency [J]. Rev Clin Esp, 2020, 221(1): 55-61.
[7] Harrison AG, Lin T, Wang P. Mechanisms of SARS-CoV-2 transmission and pathogenesis [J]. Trends Immunol, 2020, 41(12): 1100-1115.
[8] Coronaviridae Study Group of the International Committee on Taxonomy of Viruses. The species Severe acute res-piratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2 [J]. Nat Microbiol, 2020, 5(4): 536-544.
[9] Cheng MP, Papenburg J, Desjardins M, et al. Diagnostic testing for severe acute respiratory syndrome-related coronavirus 2: a narrative review [J]. Ann Intern Med, 2020, 172(11): 726-734.
[10] Venkat Kumar G, Jeyanthi V, Ramakrishnan S, et al. A short review on antibody therapy for COVID-19 [J]. New Microbes New Infect, 2020, 35(20): 100682-100685.
[11] WHO Coronavirus Disease(COVID-19)Dashboard [EB/OL].(2021-01-15)[2021-03-26]. https://covid19.who.int/.
[12] Moira CY, Xu RH. SARS: epidemiology [J]. Nov, 2003, 8(Suppl):9-14.
[13] 袁易, 王铭杰, 张欣欣. 第三代测序技术的主要特点及其在病毒基因组研究中的应用 [J]. 微生物与感染, 2016, 11(6): 380-384. YUAN Yi, WANG Mingjie, ZHANG Xinxin. characteristics of the third generation sequencing technology and its application in researching of viral genome [J]. Journal of Microbes and Infection, 2016, 11(6): 380-384.
[14] 国务院应对新型冠状病毒感染肺炎疫情联防联控机制关于做好新冠肺炎疫情常态化防控工作的指导意见[EB/OL].(2020-05-07)[2021-03-26]. http://www.gov.cn/zhengce/content/2020-05/08/content_5509896.htm.
[15] 王国强, 邓硕, 汪嘉懿,等. 样本混合检测在COVID-19诊断中的应用研究[J]. 中华实验和临床病毒学杂志, 2020, 34(5): 459-461.
[16] 关于印发新冠病毒核酸筛查稀释混样检测技术指引的通知[EB/OL].(2020-07-21)[2021-03-26]. http://wjw.fujian.gov.cn/xxgk/fgwj/gjwj/202007/t20200723_5329869.htm.
[17] 关于印发新冠病毒核酸10合1混采检测技术规范的通知[EB/OL].(2020-08-17)[2021-03-26]. http://www.gov.cn/xinwen/2020-08/19/content_5535756.htm.
[1] ZHAO Huailong, LÜ Yan, ZHAO Hong, ZHAO Baotian, HAN Ying, YANG Guoliang, WANG Chunrong, GUAN Hengyun, LIU Hui, LIU Lanzheng. Effect of sampling positions in nucleic acid test on the test result: a report from 47 confirmed COVID-19 cases in Jinan City [J]. Journal of Shandong University (Health Sciences), 2020, 58(4): 28-31.
[2] GU Xu, WANG Xiaqing, REN Wanhua, QIN Chengyong, HAN Guoqing. Expression and clinical significance of NPRL2 and Survivin in hepatocellular carcinoma [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2015, 53(6): 68-72.
[3] LIU Yimin, DU Lutao, WANG Lili, JIANG Xiumei, LI Juan, QU Ailin, WANG Haiyan, ZHENG Guixi, ZHANG Xin,YANG Yongmei, WANG Chuanxin. Identification and validation of suitable reference genes for the investigation of serum microRNA in bladder cancer patients [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2014, 52(5): 86-91.
[4] FAN Ming-de1, ZHANG Yuan2, MIAO Bao-wang1, ZHENG Kun-peng1, LI Ke1, WANG Cheng-wei1. Expression of Nod-like receptor pyrin domain-containing protein 3 (NLRP3) in glioma [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2013, 51(4): 51-54.
[5] WANG Xue-qin1, YUE Zhong-yong2, LI Ke-zhong1, MA Jin-feng1. Effects of cyclic mechanical stretch on the expression of TLR4 in alveolar macrophages of rats [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2013, 51(06): 40-43.
[6] ZHANG Zhen-wei1, JIANG Zhong-min2. Expression and clinical significance of Mel-18 mRNA in
esophageal squamous cell carcinoma
[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2012, 50(2): 78-.
[7] GAO Na,LI Zhi-hong,DING Bu-tong,CHEN Yun,WANG Yun-shan,GUO Nong-jian. Significance of ETV6 rearrangement in acute myelogenous leukemia-M4Eo [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2008, 46(4): 385-388.
[8] NIU Rui,LIU Bo,SHAO Ming-ju,WANG Wei. mRNA expression of lunx in regional lymph nodes of non-small cell lung cancer and its correlation with prognosis [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, 45(9): 884-885.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
[1] HUANG Fei,WANG Huaijing,XING Yi,GAO Wei,LI Yonggang,XING Ziying,LI Zhenzhong. Protective effects of NGF and GM1 on primary sensory neurons in SD rat with sciatic nerve injury[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2006, 44(4): 332 -335 .
[2] LYU Longfei, LI Lin, LI Shuhai, QI Lei, LU Ming, CHENG Chuanle, TIAN Hui. Application of laparoscopic fine needle catheter jejunostomy in minimally invasive McKeown resection of esophageal cancer[J]. Journal of Shandong University (Health Sciences), 2020, 1(7): 77 -81 .
[3] SHAO Haigang, WANG Xuan, WANG Qing. Anatomy of the root canal system of mandibular first premolar in population of Shandong Province[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2014, 52(9): 85 -89 .
[4] TANG Fang1,2, ZHANG Yingqian3, WANG Zhiqiang4, KANG Dianmin4,
WANG Jiezhen1, XUE Fuzhong1
. A 2D minimal spanning tree model of the spatial structures of natural focal disease[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2009, 47(01): 106 -110 .
[5] LI Wei,LI Dao-wei,YE Qian,GAO Shun-cui,JIANG Shu-juan.

Diagnostic value of transbronchial needle aspiration in paratracheal mediastinal lesions

[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2008, 46(11): 1063 -1065 .
[6] ZHU Xiaoli1, GUO Shuling1, SU Lei1, FENG Yuxin2, YUAN Fangshu1. Extraction of total proteins from demodex and qualification of their molecular weights[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2014, 52(5): 58 -62 .
[7] WANG Xu-ping,ZHAO Ling,FENG Yu-xin,SHANG Lin-shan,LIU Jin-cheng,. [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2006, 44(6): 564 -567 .
[8] WANG Xue-ping,YANG Hong-ling. [J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, (2): 213 .
[9] LI Yu-liang,WANG Yong-zheng,WANG Xiao-hua,ZHANG Fu-jun,ZHU Li-dong,ZHANG Wang-ming,LI Zheng,LI Zhen-jia,ZHANG Kai-xian. I implantation combined with Gemcitabine in the treatment of advanced pancreatic cancer[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, 45(4): 393 -396 .
[10] HUANG Sheng-yun,ZHANG Dong-sheng,ZHANG Shi-zhou,LIU Gui-jun,ZHAO Yue-ran,WANG Lai-cheng,LIU Yi-qing. Construction of recombination expression vector pIRES-CD and pIRES-TK and their expression in ACC-2 cells[J]. JOURNAL OF SHANDONG UNIVERSITY (HEALTH SCIENCES), 2007, 45(2): 117 -123 .