Journal of Shandong University (Health Sciences) ›› 2024, Vol. 62 ›› Issue (2): 51-59.doi: 10.6040/j.issn.1671-7554.0.2023.1092

• Clinical Medicine • Previous Articles     Next Articles

Establishment and value assessment of colon cancer diagnostic models based on multiple variables and different machine learning algorithms

LIANG Yongyuan1, CAI Peifei2, ZHENG Guixi1   

  1. 1. Department of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan 250012, Shandong, China;
    2. Department of Blood Transfusion, Affiliated Hospital of Jining Medical College, Jining 272000, Shandong, China
  • Published:2024-03-29

Abstract: Objective To establish a colon cancer diagnostic model based on multiple variables using various machine learning algorithms and to assess its clinical application value. Methods Serum samples from 119 colon cancer patients and 125 healthy controls were collected. Serum exosome was extracted, and miRNA 214-3p(miR-214-3p)level was measured using RT-qPCR. Receiver operating characteristic(ROC)curve was plotted to evaluate the diagnostic efficiency of colon cancer. Additionally, 30 routine laboratory items of colon cancer patients and healthy controls were collected. Characteristic variables were screened, and 11 algorithms were used to establish the diagnostic model. The optimal model was selected with ROC and machine learning curves. Results The expression level of miR-214-3p in colon cancer patients was significantly higher than that in healthy controls(P<0.001), with the area under the ROC curve(AUC)being 0.820, indicating good diagnostic performance. After the expression level of miR-214-3p and other 30 routine laboratory items were enrolled, 4 characteristic variables were screened to establish the diagnostic model, including UREA, carcinoembryonic antigen, monocyte and miR-214-3p. The Logistic regression algorithm was identified as the optimal one(AUC=0.93). Conclusion Serum exosome miR-214-3p is a potential biomarker of colon cancer. The model based on 4 characteristic variables and Logistic regression algorithm has an excellent diagnostic performance for diagnosing colon cancer.

Key words: Colon cancer, miR-214-3p, Exosome, Machine learning

CLC Number: 

  • R783
[1] 闫超, 陕飞, 李子禹. 2020年中国与全球结直肠癌流行概况分析[J]. 中华肿瘤杂志, 2023, 45(3): 221-229. YAN Chao, SHAN Fei, LI Ziyu. Epidemiological analysis of colorectal cancer in China and the world in 2020. Chinese Journal of Cancer, 2019, 45(3): 221-229.
[2] Fabregas JC, Ramnaraign B, George TJ. Clinical updates for colon cancer care in 2022[J]. Clin Colorectal Cancer, 2022, 21(3): 198-203.
[3] Su Y, Tian X, Gao R, et al. Colon cancer diagnosis and staging classification based on machine learning and bioinformatics analysis[J]. Comput Biol Med, 2022, 145: 105409. doi: 10.1016/j.compbiomed.2022.105409.
[4] Tang S, Cheng J, Yao Y, et al. Combination of four serum exosomal miRNAs as novel diagnostic biomarkers for early-stage gastric cancer[J]. Front Genet, 2020, 11: 237. doi:10.3389/fgene.2020.00237.
[5] Miao C, Zhang W, Feng L, et al. Cancer-derived exosome miRNAs induce skeletal muscle wasting by Bcl-2-mediated apoptosis in colon cancer cachexia[J]. Mol Ther Nucleic Acids, 2021, 24: 923-938. doi: 10.1016/j.omtn.2021.04.015.
[6] Wei W, Li Y, Huang T. Using machine learning methods to study colorectal cancer tumor micro-environment and its biomarkers[J]. Int J Mol Sci, 2023, 24(13): 11133. doi: 10.3390/ijms241311133.
[7] Nguyen QTN, Nguyen PA, Wang CJ, et al. Machine learning approaches for predicting 5-year breast cancer survival: a multicenter study[J]. Cancer Sci, 2023, 114(10): 4063-4072.
[8] Lannagan TR, Jackstadt R, Leedham SJ, et al. Advances in colon cancer research: in vitro and animal models[J]. Curr Opin Genet Dev, 2021, 66: 50-56. doi: 10.1016/j.gde.2020.12.003.
[9] Ahmed M. Colon cancer: a clinicians perspective in 2019[J]. Gastroenterology Res, 2020, 13(1): 1-10.
[10] Khan SZ, Lengyel CG. Challenges in the management of colorectal cancer in low- and middle-income countries[J]. Cancer Treat Res Commun, 2023, 35: 100705. doi: 10.1016/j.ctarc.2023.100705.
[11] Verkuijl SJ, Jonker JE, Trzpis M, et al. Functional outcomes of surgery for colon cancer: a systematic review and meta-analysis[J]. Eur J Surg Oncol, 2021, 47(5): 960-969.
[12] 刘睿清, 卢云. 基于循证医学的早期结肠癌外科治疗进展[J]. 中华胃肠外科杂志,2022, 25(12): 1144-1149. LIU Ruiqing, LU Yun. Advances in surgical treatment of early colon cancer based on evidence-based medicine[J]. Chinese Journal of Gastrointestinal Surgery, 2002, 25(12): 1144-1149.
[13] Chan SCH, Liang JQ. Advances in tests for colorectal cancer screening and diagnosis[J]. Expert Rev Mol Diagn, 2022, 22(4): 449-460.
[14] Birgisson H, Olafsdottir EJ, Sverrisdottir A, et al. Screening for cancer of the colon and rectum a review on incidence, mortality, cost and benefit[J]. Laeknabladid, 2021, 107(9): 398-405.
[15] Jain S, Maque J, Galoosian A, et al. Optimal strategies for colorectal cancer screening[J]. Curr Treat Options Oncol, 2022, 23(4): 474-493.
[16] Shaukat A, Levin TR. Current and future colorectal cancer screening strategies[J]. Nat Rev Gastroenterol Hepatol, 2022, 19(8): 521-531.
[17] Liang G, Zhu Y, Ali DJ, et al. Engineered exosomes for targeted co-delivery of miR-21 inhibitor and chemotherapeutics to reverse drug resistance in colon cancer[J]. J Nanobiotechnology, 2020, 18(1): 10. doi: 10.1186/s12951-019-0563-2.
[18] Wang L, Song X, Yu M, et al. Serum exosomal miR-377-3p and miR-381-3p as diagnostic biomarkers in colorectal cancer[J]. Future Oncol, 2022, 18(7): 793-805.
[19] Maeda K, Sasaki H, Ueda S, et al. Serum exosomal microRNA-34a as a potential biomarker in epithelial ovarian cancer[J]. J Ovarian Res, 2020, 13(1): 47. doi: 10.1186/s13048-020-00648-1.
[20] Karimi E, Dehghani A, Azari H, et al. Molecular mechanisms of miR-214 involved in cancer and drug resistance[J]. Curr Mol Med, 2023, 23(7): 589-605.
[21] He GN, Bao NR, Wang S, et al. Ketamine induces ferroptosis of liver cancer cells by targeting lncRNA PVT1/miR-214-3p/GPX4[J]. Drug Des Devel Ther, 2021, 15: 3965-3978. doi: 10.2147/dddt.S332847.
[22] Wu Y, Xu X. Long non-coding RNA signature in colorectal cancer: research progression and clinical application[J]. Cancer Cell Int, 2023, 23(1): 28. doi: 10.1186/s12935-023-02867-0.
[23] Sukmana BI, Al-Hawary SIS, Abosaooda M, et al. A thorough and current study of miR-214-related targets in cancer[J]. Pathol Res Pract, 2023, 249:154770. doi: 10.1016/j.prp.2023.154770.
[24] Hossain MS, Karuniawati H, Jairoun AA, et al. Colorectal cancer: a review of carcinogenesis, global epidemiology, current challenges, risk factors, preventive and treatment strategies[J]. Cancers(Basel), 2022, 14(7): 1732. doi: 10.3390/cancers14071732.
[25] Wang C, Sun H, Liu J. BUN level is associated with cancer prevalence[J]. Eur J Med Res, 2023, 28(1): 213. doi: 10.1186/s40001-023-01186-4.
[26] Qin WH, Yang ZS, Li M, et al. High serum levels of cholesterol increase antitumor functions of nature killer cells and reduce growth of liver tumors in mice[J]. Gastroenterology, 2020, 158(6): 1713-1727.
[27] Larionova I, Patysheva M, Iamshchikov P, et al. PFKFB3 overexpression in monocytes of patients with colon but not rectal cancer programs pro-tumor macrophages and is indicative for higher risk of tumor relapse[J]. Front Immunol, 2022, 13: 1080501. doi: 10.3389/fimmu.2022.1080501.
[28] Yu K, Qiang G, Peng S, et al. Potential diagnostic value of the hematological parameters lymphocyte-monocyte ratio and hemoglobin-platelet ratio for detecting colon cancer[J]. J Int Med Res, 2022, 50(9): 3000605221122742. doi: 10.1177/03000605221122742.
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